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Species belonging to selected taxon:
Brassica rapa
ABOUT THIS RECORD
ID:
MNEST046701
species:
Brassica rapa
source:
microPC, original name:
miR159
Taxonomy by NCBI:
Brassica rapa
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCT
miRNA*
GGCTCCTTATAGTTCAAACG
mismatches:
1
bulges:
0
View larger
pre-miRNA
AG
GGCTCCTTATAGTTCAAACG
AGAGTTTAGCAGGGTAAAGAAAAGCTGCTAAGCTATGAATCCCATAAGCCCTAATCCTTATATATAAAAAGGATTTGG
TTATATGGCTTACATATCTCAGGAGCTTTAACTTGCCCTTTAATTGCTTTTACTCTTC
TTTGGATTGAAGGGAGCTCT
dot-bracket secondary structure
((
((((((((.(((((((((.(
(((((..((((((((((...((((((.((.((.((((.(..(((((((((..(((((((.........))))))).))
)).)))))..).)))).)).)).))))))...))))))......))))...)))))).
))))))))).))))))))))
SIMILARITIES
miRBase
bra-MIR159a
:
3e-98
PMRD
bra-miR159a
:
3e-98
microPC
miR159
:
3e-98
UniProt
no hits
RFAM
MIR159: 1e-63
Identical with:
bna-MIR159
from miRBase (
MNEST040261
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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